Running Ultima analysis pipelines on AWS HealthOmics
Ultima Genomics offers pipelines as Ready2Run workflows on AWS HealthOmics. Ready2Run workflows enable you to run these pipelines on AWS HealthOmics by simply bringing your data. For more flexibility, such as the use of larger file sizes or changing the reference genome, you can convert Ready2Run workflows to private workflows.
To get started visit the UltimaGenomics repository for workflows compatible with AWS HealthOmics:
Each Ready2Run workflow folder contains the following:
Required WDL file(s)
“How To” documentation that details the workflow and how to run it externally of WDL.
Documentation of the WDL inputs and outputs
.json file that lists the parameters for workflow
Folder with optional input templates with default parameters for the WDL
Folder containing tasks the WDL is running
For more questions about these workflows, contact healthomics.support@ultimagen.com
Olink Explore HT Analysis
Ultima Genomics’ UG 100 sequencing platform provides on-instrument analysis support for Olink proteomics libraries, including sequence matching of Olink forward and reverse barcodesto reference whitelists. The identified forward/reverse barcodes are tabulated to generate a counts file (hist.csv) that is designed for input directly into Olink’s NPX analysis software